MRIQC: individual T1w report

Summary

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv0.2901724577363984
cnr4.43143804449505
efc0.5646150408085469
fber125.7272720336914
fwhmavg4.0383000000000004
fwhmx3.71334
fwhmy4.42163
fwhmz3.97993
icvscsf0.1865994920666842
icvsgm0.4726011602592309
icvswm0.34079934767408493
inumed0.7300113439559937
inurange0.25987269878387453
qi10.0
qi20.0034592146993817777
rpvecsf28.451770567505164
rpvegm12.999137393542966
rpvewm20.526039897612236
sizex180
sizey256
sizez256
snrcsf2.493083973290392
snrgm10.577755358031482
snrtotal11.167520705593972
snrwm20.431722785460043
snrdcsf16.88435940048112
snrdgm32.1798454076026
snrdtotal32.92411612905376
snrdwm49.70814357907755
spacingx1.0
spacingy1.0
spacingz1.0
summarybgk1.032512214567081
summarybgmad13.179736137390137
summarybgmean47.19697952270508
summarybgmedian46.035797119140625
summarybgn2698428.0
summarybgp0527.148850440979004
summarybgp9571.4215606689453
summarybgstdv13.816766738891602
summarycsfk0.9268419019476082
summarycsfmad147.58303833007812
summarycsfmean350.24127197265625
summarycsfmedian339.671875
summarycsfn15049.0
summarycsfp05162.28333740234376
summarycsfp95572.7204589843745
summarycsfstdv136.2411346435547
summarygmk0.27582140268471056
summarygmmad58.24163818359375
summarygmmean649.517822265625
summarygmmedian647.3795166015625
summarygmn49071.0
summarygmp05552.38720703125
summarygmp95755.0038146972656
summarygmstdv61.201351165771484
summarywmk0.7235471603175254
summarywmmad44.080814361572266
summarywmmean997.5245361328125
summarywmmedian1000.005859375
summarywmn174651.0
summarywmp05909.8424377441406
summarywmp951072.8368530273438
summarywmstdv48.94364547729492
tpmoverlapcsf0.19884416460990906
tpmoverlapgm0.5327592492103577
tpmoverlapwm0.5413821339607239
wm2max0.7289432302592639

Metadata

AcquisitionMatrixPE256
ConversionSoftwaredcm2niix
ConversionSoftwareVersionv1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber0000000517353VH3
EchoTime0.003828
FlipAngle8
ImageOrientationPatientDICOM[0, 1, 0, 0, 0, -1]
ImageType['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOMROW
InstitutionNameMichigan_State_University
InversionTime0.04
MRAcquisitionType3D
MagneticFieldStrength3
ManufacturerGE
ManufacturersModelNameSigna_HDxt
ModalityMR
PatientPositionHFS
PercentPhaseFOV100
PixelBandwidth162.734
ProtocolNamemprage_1mm_iso_20.83_bw
ReconMatrixPE256
RepetitionTime0.008596
SAR0.306132
ScanOptionsNONE
ScanningSequenceRM
SequenceVariantNONE
SeriesDescriptionmprage_1mm_iso_20.83_bw
SliceThickness1
SoftwareVersions24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices1
StationNameMR03MR03

Provenance information

md5sume5c9413fd1eeb923692bc296eea4a204
softwaremriqc
version0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.