MRIQC: individual T1w report

Summary

Subject ID: 018_ControlPre.
Date and time: 2018-05-07, 01:42.
MRIQC version: 0.10.4.
Workflow details:
- Detected a zero-filled frame, has the original image been rotated?

Visual reports

Zoomed-in (brain mask)

Background noise

Extracted Image Quality Metrics (IQMs)

cjv			0.2901724577363984
cnr			4.43143804449505
efc			0.5646150408085469
fber			125.7272720336914
fwhm	avg		4.0383000000000004
fwhm	x		3.71334
fwhm	y		4.42163
fwhm	z		3.97993
icvs	csf		0.1865994920666842
icvs	gm		0.4726011602592309
icvs	wm		0.34079934767408493
inu	med		0.7300113439559937
inu	range		0.25987269878387453
qi	1		0.0
qi	2		0.0034592146993817777
rpve	csf		28.451770567505164
rpve	gm		12.999137393542966
rpve	wm		20.526039897612236
size	x		180
size	y		256
size	z		256
snr	csf		2.493083973290392
snr	gm		10.577755358031482
snr	total		11.167520705593972
snr	wm		20.431722785460043
snrd	csf		16.88435940048112
snrd	gm		32.1798454076026
snrd	total		32.92411612905376
snrd	wm		49.70814357907755
spacing	x		1.0
spacing	y		1.0
spacing	z		1.0
summary	bg	k	1.032512214567081
summary	bg	mad	13.179736137390137
summary	bg	mean	47.19697952270508
summary	bg	median	46.035797119140625
summary	bg	n	2698428.0
summary	bg	p05	27.148850440979004
summary	bg	p95	71.4215606689453
summary	bg	stdv	13.816766738891602
summary	csf	k	0.9268419019476082
summary	csf	mad	147.58303833007812
summary	csf	mean	350.24127197265625
summary	csf	median	339.671875
summary	csf	n	15049.0
summary	csf	p05	162.28333740234376
summary	csf	p95	572.7204589843745
summary	csf	stdv	136.2411346435547
summary	gm	k	0.27582140268471056
summary	gm	mad	58.24163818359375
summary	gm	mean	649.517822265625
summary	gm	median	647.3795166015625
summary	gm	n	49071.0
summary	gm	p05	552.38720703125
summary	gm	p95	755.0038146972656
summary	gm	stdv	61.201351165771484
summary	wm	k	0.7235471603175254
summary	wm	mad	44.080814361572266
summary	wm	mean	997.5245361328125
summary	wm	median	1000.005859375
summary	wm	n	174651.0
summary	wm	p05	909.8424377441406
summary	wm	p95	1072.8368530273438
summary	wm	stdv	48.94364547729492
tpm	overlap	csf	0.19884416460990906
tpm	overlap	gm	0.5327592492103577
tpm	overlap	wm	0.5413821339607239
wm2max			0.7289432302592639

Metadata

AcquisitionMatrixPE	256
ConversionSoftware	dcm2niix
ConversionSoftwareVersion	v1.0.20171017 (OpenJPEG build) GCC4.8.4
DeviceSerialNumber	0000000517353VH3
EchoTime	0.003828
FlipAngle	8
ImageOrientationPatientDICOM	[0, 1, 0, 0, 0, -1]
ImageType	['ORIGINAL', 'PRIMARY', 'OTHER']
InPlanePhaseEncodingDirectionDICOM	ROW
InstitutionName	Michigan_State_University
InversionTime	0.04
MRAcquisitionType	3D
MagneticFieldStrength	3
Manufacturer	GE
ManufacturersModelName	Signa_HDxt
Modality	MR
PatientPosition	HFS
PercentPhaseFOV	100
PixelBandwidth	162.734
ProtocolName	mprage_1mm_iso_20.83_bw
ReconMatrixPE	256
RepetitionTime	0.008596
SAR	0.306132
ScanOptions	NONE
ScanningSequence	RM
SequenceVariant	NONE
SeriesDescription	mprage_1mm_iso_20.83_bw
SliceThickness	1
SoftwareVersions	24_LX_MR_Software_release:HD16.0_V02_1131.a
SpacingBetweenSlices	1
StationName	MR03MR03

Provenance information

md5sum	e5c9413fd1eeb923692bc296eea4a204
software	mriqc
version	0.10.4

For details on the IQMs (image quality metrics) and further information on the enclosed plots, please read the documentation.